From markw at illuminae.com Wed Apr 28 11:55:56 2010 From: markw at illuminae.com (Mark Wilkinson) Date: Wed, 28 Apr 2010 08:55:56 -0700 Subject: [MOBY-l] BioMoby code In-Reply-To: <4138367.221272469951615.JavaMail.SYSTEM@holland> References: <4138367.221272469951615.JavaMail.SYSTEM@holland> Message-ID: Hi Moby-ers! 1) Is anyone else having trouble with the anonymous CVS? 2) does anyone know who the "owner" is of the tutorial at eu-sol.net? M On Wed, 28 Apr 2010 08:52:29 -0700, Vanessa Aguiar Pulido wrote: > Hi, > > I'm trying to do it anonymously. I previously downloaded the code using > what it is said in this web page: > http://biomoby.open-bio.org/index.php/for-developers/get_code > that's also where I got your email from. If I try to update that it > won't work. It keeps on asking for the password. > > But my main problem is when I try to download the code for eclipse as > the video in this web page shows: > http://www.eu-sol.net/science/bioinformatics/tutorials/jmoby-step-by-step/writing-biomoby-web-services/setting-up-jmoby-with-eclipse > . > I could do it once, but then three days from now I wasn't able anymore. > That's when I tried to update the previously downloaded code to see if > there was something wrong with eclipse or so. > > I appreciate a lot your help! > > Thank you in advance, > Vanessa. -- Mark D Wilkinson, PI Bioinformatics Assistant Professor, Medical Genetics The James Hogg iCAPTURE Centre for Cardiovascular and Pulmonary Research Providence Heart + Lung Institute University of British Columbia - St. Paul's Hospital Vancouver, BC, Canada From usadel at mpimp-golm.mpg.de Wed Apr 28 15:07:21 2010 From: usadel at mpimp-golm.mpg.de (Bjoern Usadel) Date: Wed, 28 Apr 2010 21:07:21 +0200 Subject: [MOBY-l] BioMoby code In-Reply-To: References: <4138367.221272469951615.JavaMail.SYSTEM@holland> Message-ID: <4BD88769.9010506@mpimp-golm.mpg.de> Hi Mark, 2) likely this was Andreas Groskurth in Heiko Schoof's group. Best Wishes, Bj?rn Btw Did Vanessa write to you personally? I hardly get any more Moby mails. (Maybe our overzealous spam filter again) Mark Wilkinson wrote: > Hi Moby-ers! > > 1) Is anyone else having trouble with the anonymous CVS? > > 2) does anyone know who the "owner" is of the tutorial at eu-sol.net? > > > > M > > > > > On Wed, 28 Apr 2010 08:52:29 -0700, Vanessa Aguiar Pulido > wrote: > >> Hi, >> >> I'm trying to do it anonymously. I previously downloaded the code using >> what it is said in this web page: >> http://biomoby.open-bio.org/index.php/for-developers/get_code >> that's also where I got your email from. If I try to update that it >> won't work. It keeps on asking for the password. >> >> But my main problem is when I try to download the code for eclipse as >> the video in this web page shows: >> http://www.eu-sol.net/science/bioinformatics/tutorials/jmoby-step-by-step/writing-biomoby-web-services/setting-up-jmoby-with-eclipse >> . >> I could do it once, but then three days from now I wasn't able anymore. >> That's when I tried to update the previously downloaded code to see if >> there was something wrong with eclipse or so. >> >> I appreciate a lot your help! >> >> Thank you in advance, >> Vanessa. > > > > > -- -------------------------------------------------- Bj?rn Usadel, PhD Max Planck Institute of Molecular Plant Physiology AG Integrative Carbon Biology Am Muehlenberg 1 14476 Potsdam-Golm Tel.: +49 331 5678153 email usadel at mpimp-golm.mpg.de http://tinyurl.com/IntegrativeCarbonBiology -------------------------------------------------- From markw at illuminae.com Wed Apr 28 15:38:01 2010 From: markw at illuminae.com (Mark Wilkinson) Date: Wed, 28 Apr 2010 12:38:01 -0700 Subject: [MOBY-l] BioMoby code In-Reply-To: <4BD88769.9010506@mpimp-golm.mpg.de> References: <4138367.221272469951615.JavaMail.SYSTEM@holland> <4BD88769.9010506@mpimp-golm.mpg.de> Message-ID: Hi Bjoern, Yes, Vanessa wrote to me personally, and then I forwarded it to the mailing list. Since Vanessa is in Spain, I thought she might be able to connect with some of our great Spanish colleagues on the list to get 1:1 help in her own language as she gets started working with Moby :-) b.t.w. I would welcome (and encourage!) all Moby'ers to have a look at the "Moby 2.0" project - SADI (http://sadiframework.org). It fixes so many of the problems/irritations we all had with Moby, and we have focused on the tooling from the get-go. We already have a Taverna plug-in, as well as a Protege plugin (design your ontology, then publish it as a SADI service from inside of Protege!). Support for Java and Perl at the code level, of course :-) You can learn more about SADI from my slide-share presentations: http://www.slideshare.net/markmoby We have recently been funded a LOT of money specifically to help people get started deploying SADI services of their own, so if you want to participate just let me know! Everyone welcome, as always!! Mark On Wed, 28 Apr 2010 12:07:21 -0700, Bjoern Usadel wrote: > Hi Mark, > > 2) likely this was Andreas Groskurth in Heiko Schoof's group. > > Best Wishes, > Bj?rn > > Btw Did Vanessa write to you personally? I hardly get any more Moby > mails. (Maybe our overzealous spam filter again) > > Mark Wilkinson wrote: >> Hi Moby-ers! >> 1) Is anyone else having trouble with the anonymous CVS? >> 2) does anyone know who the "owner" is of the tutorial at eu-sol.net? >> M >> On Wed, 28 Apr 2010 08:52:29 -0700, Vanessa Aguiar Pulido >> wrote: >> >>> Hi, >>> >>> I'm trying to do it anonymously. I previously downloaded the code >>> using what it is said in this web page: >>> http://biomoby.open-bio.org/index.php/for-developers/get_code >>> that's also where I got your email from. If I try to update that it >>> won't work. It keeps on asking for the password. >>> >>> But my main problem is when I try to download the code for eclipse as >>> the video in this web page shows: >>> http://www.eu-sol.net/science/bioinformatics/tutorials/jmoby-step-by-step/writing-biomoby-web-services/setting-up-jmoby-with-eclipse >>> . >>> I could do it once, but then three days from now I wasn't able >>> anymore. That's when I tried to update the previously downloaded code >>> to see if there was something wrong with eclipse or so. >>> >>> I appreciate a lot your help! >>> >>> Thank you in advance, >>> Vanessa. >> > -- Mark D Wilkinson, PI Bioinformatics Assistant Professor, Medical Genetics The James Hogg iCAPTURE Centre for Cardiovascular and Pulmonary Research Providence Heart + Lung Institute University of British Columbia - St. Paul's Hospital Vancouver, BC, Canada From markw at illuminae.com Wed Apr 28 16:00:31 2010 From: markw at illuminae.com (Mark Wilkinson) Date: Wed, 28 Apr 2010 13:00:31 -0700 Subject: [MOBY-l] BioMoby code In-Reply-To: <4BD863DF.1070006@cnio.es> References: <4138367.221272469951615.JavaMail.SYSTEM@holland> <4BD863DF.1070006@cnio.es> Message-ID: Just FYI - the Anonymous CVS is working again now. Chris Dag fixed it this morning. Mark From markw at illuminae.com Thu Apr 29 10:57:39 2010 From: markw at illuminae.com (Mark Wilkinson) Date: Thu, 29 Apr 2010 07:57:39 -0700 Subject: [MOBY-l] BioMoby code In-Reply-To: References: <4138367.221272469951615.JavaMail.SYSTEM@holland> <4BD88769.9010506@mpimp-golm.mpg.de> Message-ID: Hello Andreas! Nice to hear from you again! It's all good - my concern was that the tutorial might be outdated, but it isn't. The tutorial is correct, but the Moby CVS password was not working yesterday. Thanks for the kind words about SADI. The project is gaining a lot of momentum now, even from some of the "big players"!! As the Open-Bio folks say.... Simple and Open WINS! Say HI to Heiko from me! Mark On Thu, 29 Apr 2010 01:36:16 -0700, Andreas Groscurth wrote: > Hi all, > > just looked accidentlly my old emails and saw this. > > Yes I was the owner of the eu-sol tutorial, but with leaving Heikos > group I assume he's now responsible for that. Dont know if there is a > dedicated person for that now - you have to ask Heiko. > > btw - just looked at the SADI stuff... looks reallllllly cool - keep up > that work ! > > Cheers > Andreas > > ----- Urspr?ngliche Nachricht ----- > Von: Bjoern Usadel > Datum: Mittwoch, 28. April 2010, 21:23 > Betreff: Re: [MOBY-l] BioMoby code > An: Mark Wilkinson > Cc: Vanessa Aguiar Pulido , "moby-l at biomoby.org" > > >> Hi Mark, >> >> 2) likely this was Andreas Groskurth in Heiko Schoof's group. >> >> Best Wishes, >> Bj?rn >> >> Btw Did Vanessa write to you personally? I hardly get any more >> Moby >> mails. (Maybe our overzealous spam filter again) >> >> Mark Wilkinson wrote: >> > Hi Moby-ers! >> > >> > 1) Is anyone else having trouble with the >> anonymous CVS? >> > >> > 2) does anyone know who the "owner" is of the tutorial >> at eu-sol.net? >> > >> > >> > >> > M >> > >> > >> > >> > >> > On Wed, 28 Apr 2010 08:52:29 -0700, Vanessa Aguiar >> Pulido> wrote: >> > >> >> Hi, >> >> >> >> I'm trying to do it anonymously. I previously downloaded the >> code using>> what it is said in this web page: >> >> http://biomoby.open-bio.org/index.php/for-developers/get_code >> >> that's also where I got your email from. If I try to update >> that it>> won't work. It keeps on asking for the password. >> >> >> >> But my main problem is when I try to download the code for >> eclipse as>> the video in this web page shows: >> >> http://www.eu-sol.net/science/bioinformatics/tutorials/jmoby- >> step-by-step/writing-biomoby-web-services/setting-up-jmoby-with- >> eclipse>> . >> >> I could do it once, but then three days from now I wasn't >> able anymore.>> That's when I tried to update the previously downloaded >> code >> to see if>> there was something wrong with eclipse or so. >> >> >> >> I appreciate a lot your help! >> >> >> >> Thank you in advance, >> >> Vanessa. >> > >> > >> > >> > >> > >> >> -- >> -------------------------------------------------- >> Bj?rn Usadel, PhD >> Max Planck Institute of Molecular Plant Physiology >> AG Integrative Carbon Biology >> Am Muehlenberg 1 >> 14476 Potsdam-Golm >> Tel.: +49 331 5678153 >> email usadel at mpimp-golm.mpg.de >> http://tinyurl.com/IntegrativeCarbonBiology >> -------------------------------------------------- >> >> _______________________________________________ >> moby-l mailing list >> moby-l at lists.open-bio.org >> http://lists.open-bio.org/mailman/listinfo/moby-l -- Mark D Wilkinson, PI Bioinformatics Assistant Professor, Medical Genetics The James Hogg iCAPTURE Centre for Cardiovascular and Pulmonary Research Providence Heart + Lung Institute University of British Columbia - St. Paul's Hospital Vancouver, BC, Canada