From alexandre.riazanov at gmail.com Thu Jul 29 13:58:07 2010 From: alexandre.riazanov at gmail.com (Alexandre Riazanov) Date: Thu, 29 Jul 2010 14:58:07 -0300 Subject: [MOBY-l] combining SADI services with BioMoby services in a Taverna workflow Message-ID: Hi, Apologies if you receive this twice. Does anybody have experience with combining SADI services with BioMoby services in a Taverna workflow without coding? Is this possible at all? I would be grateful for any workflow examples and/or pointers to docs/wikis/mailing lists. ====================================== Alexandre Riazanov (Alexander Ryazanov), PhD Saint John, New Brunswick, Canada Skype: alexandre.riazanov http://www.freewebs.com/riazanov/ http://www.linkedin.com/in/riazanov ====================================== From markw at illuminae.com Thu Jul 29 14:06:52 2010 From: markw at illuminae.com (Mark Wilkinson) Date: Thu, 29 Jul 2010 11:06:52 -0700 Subject: [MOBY-l] combining SADI services with BioMoby services in a Taverna workflow In-Reply-To: References: Message-ID: To go into Moby services, you have to put "moby object" widgets into the workflow and then fill them with the output from the SADI service (the SADI widgets are "smart" and will automatically unpack themselves correctly). To go from Moby into SADI, you will have to add a parser for whatever output object you have (comes from a right-click on the output node in the "examine service" context menu). The parser will unpack the Moby object into raw text, which can be fed to whatever slot you need on the SADI widget. Hope that helps! M On Thu, 29 Jul 2010 10:58:07 -0700, Alexandre Riazanov wrote: > Hi, > > Apologies if you receive this twice. > > Does anybody have experience with combining SADI services with BioMoby > services in a Taverna workflow without coding? > > Is this possible at all? I would be grateful for any workflow examples > and/or pointers to docs/wikis/mailing lists. > > ====================================== > Alexandre Riazanov (Alexander Ryazanov), PhD > Saint John, New Brunswick, Canada > Skype: alexandre.riazanov > http://www.freewebs.com/riazanov/ > http://www.linkedin.com/in/riazanov > ====================================== > _______________________________________________ > moby-l mailing list > moby-l at lists.open-bio.org > http://lists.open-bio.org/mailman/listinfo/moby-l -- -- Dr. Mark Wilkinson Assistant Professor, Medical Genetics PI Bioinformatics, Heart + Lung Institute St. Paul's Hospital/UBC Vancouver, BC, Canada